TY - JOUR
T1 - Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population
AU - Khoeri, Miftahuddin Majid
AU - Maladan, Yustinus
AU - Salsabila, Korrie
AU - Alimsardjono, Lindawati
AU - Vermasari, Naritha
AU - Puspitasari, Iva
AU - Yunita, Rina
AU - Tafroji, Wisnu
AU - Sarassari, Rosantia
AU - Sari, Ratna Fathma
AU - Balqis, Sarah Azhari
AU - Wahid, Ghina Athyah
AU - Purwanto, Diana Shinta
AU - Harimurti, Kuntjoro
AU - Soebandrio, Amin
AU - Safari, Dodi
N1 - Publisher Copyright:
© 2024 The Authors
PY - 2024/4
Y1 - 2024/4
N2 - Streptococcus pneumoniae is the leading cause of bacterial pneumonia, bacteremia, and meningitis. Indonesia introduced the pneumococcal conjugate vaccine (PCV) nationwide in 2022. In this study, we present whole genome sequence (WGS) data of 94 S. pneumoniae isolates that were obtained from hospitalized patients, healthy children, and adult groups from different regions prior to PCV program in Indonesia. DNA sequences of S. pneumoniae were obtained using the TruSeq Nano DNA kit (Illumina NovaSeq6000 Platform). The genome data of S. pneumoniae features a 1,969,562 bp to 2,741,371 bp circular chromosome with 39–40% G+C content. The genome includes 1935–3319 coding sequences (CDS), 2 to 5 rRNA genes, 43 to 49 tRNA genes, and 56 to 71 ncRNA. These data will be useful for analyzing the serotype, sequence type, virulence genes, antimicrobial resistance genes, and the impact of pneumococcal vaccination in Indonesia. The FASTQ raw files of these sequences are available under BioProject accession number PRJNA995903 and Sequence Read Archive accession numbers SRR25316461-SRR25316554.
AB - Streptococcus pneumoniae is the leading cause of bacterial pneumonia, bacteremia, and meningitis. Indonesia introduced the pneumococcal conjugate vaccine (PCV) nationwide in 2022. In this study, we present whole genome sequence (WGS) data of 94 S. pneumoniae isolates that were obtained from hospitalized patients, healthy children, and adult groups from different regions prior to PCV program in Indonesia. DNA sequences of S. pneumoniae were obtained using the TruSeq Nano DNA kit (Illumina NovaSeq6000 Platform). The genome data of S. pneumoniae features a 1,969,562 bp to 2,741,371 bp circular chromosome with 39–40% G+C content. The genome includes 1935–3319 coding sequences (CDS), 2 to 5 rRNA genes, 43 to 49 tRNA genes, and 56 to 71 ncRNA. These data will be useful for analyzing the serotype, sequence type, virulence genes, antimicrobial resistance genes, and the impact of pneumococcal vaccination in Indonesia. The FASTQ raw files of these sequences are available under BioProject accession number PRJNA995903 and Sequence Read Archive accession numbers SRR25316461-SRR25316554.
KW - Adult
KW - Healthy children
KW - Hospitalized patient
KW - Indonesia
KW - Pneumococcal conjugate vaccine
KW - Streptococcus pneumoniae
KW - Whole-genome sequence
UR - http://www.scopus.com/inward/record.url?scp=85186693540&partnerID=8YFLogxK
U2 - 10.1016/j.dib.2024.110251
DO - 10.1016/j.dib.2024.110251
M3 - Article
AN - SCOPUS:85186693540
SN - 2352-3409
VL - 53
JO - Data in Brief
JF - Data in Brief
M1 - 110251
ER -