The estuarine ecosystem is known as suitable breeding sites for fishes because this particular habitat is receiving continuous organic matters from river ways and constant sunlight due to its depth that allows sunlight penetration. Cimandiri estuary is one of the estuaries located in the south of Java Island close to the Indian Ocean and known as a suitable habitat for eel larva that routinely collected by local people. Eel habitat has a relationship with the dynamic of space. This dynamic influenced by season, water flow, tide, bathymetry, salinity and dissolved oxygen (DO). The geographic information system is an approach in studying habitat dynamic, through modeling. Furthermore, the spatial model for eel larva habitat is required for land use planning that aimed to achieve sustainable eels larva rearing and conserve estuarine habitat as well. The aim of this research was to investigate dynamics on spatial habitat of eel larva at Cimandiri estuary, West Java.