To analyze phylogenetics in Bioinformatics, coding DNA sequences (CDS) segment is needed for maximal accuracy. However, analysis by CDS cost a lot of time and money, so a short representative segment by CDS, which is envelope protein segment or non-structural 3 (NS3) segment is necessary. After sliding window is implemented, a better short segment than envelope protein segment and NS3 is found. This paper will discuss a mathematical method to analyze sequences using nested sliding window to find a short segment which is representative for the whole genome. The result shows that our method can find a short segment which more representative about 6.57% in topological view to CDS segment than an Envelope segment or NS3 segment.
|Journal||Journal of Physics: Conference Series|
|Publication status||Published - 28 Oct 2017|
|Event||Asian Mathematical Conference 2016, AMC 2016 - Nusa Dua, Bali, Indonesia|
Duration: 25 Jul 2016 → 29 Jul 2016