Short segment search method for phylogenetic analysis using nested sliding windows

A. A. Iskandar, Alhadi B., H. Trimarsanto

Research output: Contribution to journalConference articlepeer-review

Abstract

To analyze phylogenetics in Bioinformatics, coding DNA sequences (CDS) segment is needed for maximal accuracy. However, analysis by CDS cost a lot of time and money, so a short representative segment by CDS, which is envelope protein segment or non-structural 3 (NS3) segment is necessary. After sliding window is implemented, a better short segment than envelope protein segment and NS3 is found. This paper will discuss a mathematical method to analyze sequences using nested sliding window to find a short segment which is representative for the whole genome. The result shows that our method can find a short segment which more representative about 6.57% in topological view to CDS segment than an Envelope segment or NS3 segment.

Original languageEnglish
Article number012045
JournalJournal of Physics: Conference Series
Volume893
Issue number1
DOIs
Publication statusPublished - 28 Oct 2017
EventAsian Mathematical Conference 2016, AMC 2016 - Nusa Dua, Bali, Indonesia
Duration: 25 Jul 201629 Jul 2016

Fingerprint Dive into the research topics of 'Short segment search method for phylogenetic analysis using nested sliding windows'. Together they form a unique fingerprint.

Cite this