TY - GEN
T1 - Robustness of Probabilistic U-Net for Automated Segmentation of White Matter Hyperintensities in Different Datasets of Brain MRI
AU - Maulana, Rizal
AU - Rachmadi, Muhammad Febrian
AU - Rahadianti, Laksmita
N1 - Funding Information:
We gratefully acknowledge the support from Tokopedia-UI AI Center, Faculty of Computer Science, University of Indonesia, for the NVIDIA DGX-1 that we used for running the experiments. MFR is with the Special Postdoctoral Researchers Program, RIKEN.
Funding Information:
Data collection and sharing for this project was partially funded by the Alzheimer’s Disease Neuroimaging Initiative (ADNI) (National Institutes of Health Grant U01 AG024904) and DOD ADNI (Department of Defense award number W81XWH-12-2-0012). The grantee organization is the Northern California Institute for Research and Education, and the study is coordinated by the Alzheimer’s Therapeutic Research Institute at the University of Southern California. ADNI data are disseminated by the Laboratory for Neuro Imaging at the University of Southern California.
Publisher Copyright:
© 2021 IEEE.
PY - 2021
Y1 - 2021
N2 - White Matter Hyperintensities (WMHs) are neu-roradiological features often seen in T2-FLAIR brain MRI as white regions (i.e., hyperintensities) and characteristic of small vessel disease (SVD). Detailed measurements of WMHs (e.g., their volumes, locations, distributions) are vital for clinical research, but segmenting WMHs is challenging due to WMHs' ill-posed boundaries. In this study, we investigate the robustness of Probabilistic U-Net and other deterministic deep learning models (i.e., U-Net and its variations) for automatic segmentation of WMHs. In particular, we are interested in the robustness of U-Net based deep learning models, especially the Probabilistic U-Net, for segmenting WMHs in brain MRI from different datasets. Thus, we performed two different experiments, which are k- fold cross validation experiment (i.e., training and testing using the same dataset) and cross dataset experiment (i.e., testing in different dataset). Based on our experiments, Probabilistic U-Net outperformed other tested models in k-fold cross validation experiment. On the other hand, we found that Probabilistic U-Net captured different types of uncertainty when tested in different dataset.
AB - White Matter Hyperintensities (WMHs) are neu-roradiological features often seen in T2-FLAIR brain MRI as white regions (i.e., hyperintensities) and characteristic of small vessel disease (SVD). Detailed measurements of WMHs (e.g., their volumes, locations, distributions) are vital for clinical research, but segmenting WMHs is challenging due to WMHs' ill-posed boundaries. In this study, we investigate the robustness of Probabilistic U-Net and other deterministic deep learning models (i.e., U-Net and its variations) for automatic segmentation of WMHs. In particular, we are interested in the robustness of U-Net based deep learning models, especially the Probabilistic U-Net, for segmenting WMHs in brain MRI from different datasets. Thus, we performed two different experiments, which are k- fold cross validation experiment (i.e., training and testing using the same dataset) and cross dataset experiment (i.e., testing in different dataset). Based on our experiments, Probabilistic U-Net outperformed other tested models in k-fold cross validation experiment. On the other hand, we found that Probabilistic U-Net captured different types of uncertainty when tested in different dataset.
KW - probabilistic model
KW - Probabilistic U-Net
KW - robustness
KW - segmentation of WMHs
KW - U-Net
KW - uncertainty
KW - White Matter Hyperintensities (WMHs)
UR - http://www.scopus.com/inward/record.url?scp=85123864769&partnerID=8YFLogxK
U2 - 10.1109/ICACSIS53237.2021.9631365
DO - 10.1109/ICACSIS53237.2021.9631365
M3 - Conference contribution
AN - SCOPUS:85123864769
T3 - 2021 International Conference on Advanced Computer Science and Information Systems, ICACSIS 2021
BT - 2021 International Conference on Advanced Computer Science and Information Systems, ICACSIS 2021
PB - Institute of Electrical and Electronics Engineers Inc.
T2 - 13th International Conference on Advanced Computer Science and Information Systems, ICACSIS 2021
Y2 - 23 October 2021 through 26 October 2021
ER -