TY - GEN
T1 - Re-identification of five strains of Rhizopus arrhizus from tempeh based on ITS regions of rDNA sequence data
AU - Vebliza, Y.
AU - Sjamsuridzal, W.
AU - Oetari, A.
AU - Santoso, I.
AU - Roosheroe, I. G.
N1 - Publisher Copyright:
© 2018 Author(s).
PY - 2018/10/22
Y1 - 2018/10/22
N2 - The Rhizopus strains in the Universitas Indonesia Culture Collection (UICC) were isolated from tempeh. Five strains of Rhizopus (UICC 26, UICC 36, UICC 39, UICC 55, UICC 121) were identified as R. arrhizus based on morphological and physiological characters. In the current taxonomy of Rhizopus, R. arrhizus is synonym of R. oryzae. The aim of this study was to re-identify five R. arrhizus strains by molecular approach based on internal transcribed spacers (ITS) regions of ribosomal DNA sequence data. The sequence homology search showed that strains UICC 36 and UICC 55 have very high homology (99.8%) to R. oryzae CBS 112.07T type strain, however the other three strains (UICC 26, UICC 39, and UICC 121) showed a lower homology (99.0-99.2%) to R. oryzae CBS 112.07T type strain. The phylogenetic tree showed that strains UICC 36 and UICC 55 were placed in a monophyletic group with R. oryzae CBS 112.07T type strain. The tree revealed that three strains (UICC 26, UICC 39, and UICC 121) were placed in a monophyletic group with R. delemar CBS 120.12T type strain. The phylogenetic tree showed that the group of R. delemar was phylogenetically very closely related with the group of R. oryzae. In this study, two strains (UICC 36 and UICC 55) were re-identified as R. oyzae (UICC 36 and UICC 55), and three strains (UICC 26, UICC 39, UICC 121) were re-identified as R. delemar. Morphological observation of all strains showed the characters corresponded to R. oryzae.
AB - The Rhizopus strains in the Universitas Indonesia Culture Collection (UICC) were isolated from tempeh. Five strains of Rhizopus (UICC 26, UICC 36, UICC 39, UICC 55, UICC 121) were identified as R. arrhizus based on morphological and physiological characters. In the current taxonomy of Rhizopus, R. arrhizus is synonym of R. oryzae. The aim of this study was to re-identify five R. arrhizus strains by molecular approach based on internal transcribed spacers (ITS) regions of ribosomal DNA sequence data. The sequence homology search showed that strains UICC 36 and UICC 55 have very high homology (99.8%) to R. oryzae CBS 112.07T type strain, however the other three strains (UICC 26, UICC 39, and UICC 121) showed a lower homology (99.0-99.2%) to R. oryzae CBS 112.07T type strain. The phylogenetic tree showed that strains UICC 36 and UICC 55 were placed in a monophyletic group with R. oryzae CBS 112.07T type strain. The tree revealed that three strains (UICC 26, UICC 39, and UICC 121) were placed in a monophyletic group with R. delemar CBS 120.12T type strain. The phylogenetic tree showed that the group of R. delemar was phylogenetically very closely related with the group of R. oryzae. In this study, two strains (UICC 36 and UICC 55) were re-identified as R. oyzae (UICC 36 and UICC 55), and three strains (UICC 26, UICC 39, UICC 121) were re-identified as R. delemar. Morphological observation of all strains showed the characters corresponded to R. oryzae.
UR - http://www.scopus.com/inward/record.url?scp=85056077195&partnerID=8YFLogxK
U2 - 10.1063/1.5064164
DO - 10.1063/1.5064164
M3 - Conference contribution
AN - SCOPUS:85056077195
T3 - AIP Conference Proceedings
BT - Proceedings of the 3rd International Symposium on Current Progress in Mathematics and Sciences 2017, ISCPMS 2017
A2 - Yuniati, Ratna
A2 - Mart, Terry
A2 - Anggraningrum, Ivandini T.
A2 - Triyono, Djoko
A2 - Sugeng, Kiki A.
PB - American Institute of Physics Inc.
T2 - 3rd International Symposium on Current Progress in Mathematics and Sciences 2017, ISCPMS 2017
Y2 - 26 July 2017 through 27 July 2017
ER -