Random-Forest (RF) and Support Vector Machine (SVM) Implementation for Analysis of Gene Expression Data in Chronic Kidney Disease (CKD)

Zuherman Rustam, Ely Sudarsono, Devvi Sarwinda

Research output: Contribution to journalConference articlepeer-review

7 Citations (Scopus)

Abstract

The application of mathematics in the field of bioinformatics has been widely developed. For example Support Vector Machines (SVM) and Random Forest (RF) are state of the art for classification of cancer in many applications. One of them is Chronic Kidney Disease (CKD). CKD is one of the kidney diseases that sufferers are increasing and have symptoms that are difficult to detect at first. Later, microarrays in gene expression are important tools for this approach. Microarrays gene expression provides an overview of all transcription activities in biological samples. The purpose of this research is a hybrid model combining Random Forest (RF) and Support Vector Machine (SVM) can be used to classify gene expression data. RF can highly accurate, generelize better and are interpretable and SVM (called RF-SVM) to effectively predict gene expression data with very high dimensions. In addition, from the simulation results on data from the Gene Expression Omnibus (GEO) database, it is shown that the proposed RF-SVM is a more accurate algorithm on CKD data than RFE-SVM.

Original languageEnglish
Article number052066
JournalIOP Conference Series: Materials Science and Engineering
Volume546
Issue number5
DOIs
Publication statusPublished - 1 Jul 2019
Event9th Annual Basic Science International Conference 2019, BaSIC 2019 - Malang, Indonesia
Duration: 20 Mar 201921 Mar 2019

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