TY - JOUR
T1 - Development of DNA Extraction Method for Forensics Studies of Preserved Hair and Skin Samples from Sumatran Tiger (Panthera tigris sumatrae, Pocock 1929)
AU - Andayani, Noviar
AU - Maryanto, Andi Eko
AU - Nur, Muhammad Naufal
N1 - Funding Information:
We thank to Faculty of Mathematics and Natural Sciences (FMIPA) Universitas Indonesia for financial support under the research grant Hibah Riset FMIPA UI 2021 No. NKB-023/UN2.F3/HKP.0500/2021. We also thank to Museum Zoologicum Bogoriense, Center of Biological Research, Indonesian Institute of Sciences (LIPI), Conservation of Natural Resource Office (BKSDA) of Bengkulu Province, BKSDA of Aceh Province, and Taman Safari Zoo to access the samples. We also thank Dr. Dwi Sendi Priyono and Athena Syarifa from Wildlife Conservation Society-Indonesia Program for supporting this study by providing technical support at the lab and genetic data analysis.
Publisher Copyright:
© 2023, Bogor Agricultural University. All rights reserved.
PY - 2023/9
Y1 - 2023/9
N2 - Poaching and illegal wildlife trade present severe threats to the Sumatran tiger. The high demand for tiger body parts leads to a high number of imitations in illegal markets, complicating the morphological identification of any confiscation cases. Accurate identification is essential in legal due process, given that the national protection law only regulates Indonesia's native species. Identification using molecular approaches may overcome the problem. However, most illegally traded tiger body parts have been preserved for an extended period of time, reducing the quantity and quality of the recovered DNA. This study aimed to develop a fast and effective method to recover DNA from preserved forensic samples. The methods had been tested with several museum samples of arsenic-treated hairs and a tiger skin piece obtained from the National Research and Innovation Agency (BRIN, formerly LIPI), tiger hairs obtained from Conservation of Natural Resources Agency (BKSDA) of Bengkulu Province, and a confiscated tiger skin sample from BKSDA Aceh. The DNA was extracted using ion-exchange, salting out, and protease-based methods. The results showed that the protease-based extraction outperformed the others to yield applicable DNA isolates for PCR-based species identification by Cyt b and ND2 mtDNA partial genes from preserved samples. However, further works are still needed to recover sufficient DNA yields for sex identification.
AB - Poaching and illegal wildlife trade present severe threats to the Sumatran tiger. The high demand for tiger body parts leads to a high number of imitations in illegal markets, complicating the morphological identification of any confiscation cases. Accurate identification is essential in legal due process, given that the national protection law only regulates Indonesia's native species. Identification using molecular approaches may overcome the problem. However, most illegally traded tiger body parts have been preserved for an extended period of time, reducing the quantity and quality of the recovered DNA. This study aimed to develop a fast and effective method to recover DNA from preserved forensic samples. The methods had been tested with several museum samples of arsenic-treated hairs and a tiger skin piece obtained from the National Research and Innovation Agency (BRIN, formerly LIPI), tiger hairs obtained from Conservation of Natural Resources Agency (BKSDA) of Bengkulu Province, and a confiscated tiger skin sample from BKSDA Aceh. The DNA was extracted using ion-exchange, salting out, and protease-based methods. The results showed that the protease-based extraction outperformed the others to yield applicable DNA isolates for PCR-based species identification by Cyt b and ND2 mtDNA partial genes from preserved samples. However, further works are still needed to recover sufficient DNA yields for sex identification.
KW - DNA extraction
KW - species identification
KW - Sumatran tiger
KW - wildlife forensics
KW - wildlife trades
UR - http://www.scopus.com/inward/record.url?scp=85165355779&partnerID=8YFLogxK
U2 - 10.4308/hjb.30.5.816-824
DO - 10.4308/hjb.30.5.816-824
M3 - Article
AN - SCOPUS:85165355779
SN - 1978-3019
VL - 30
SP - 816
EP - 824
JO - HAYATI Journal of Biosciences
JF - HAYATI Journal of Biosciences
IS - 5
ER -