Department of Microbiology Clinic

2024

Antimicrobial resistance among common bacterial pathogens in Indonesia: a systematic review

Gach, M. W., Lazarus, G., Simadibrata, D. M., Sinto, R., Saharman, Y. R., Limato, R., Nelwan, E. J., van Doorn, H. R., Karuniawati, A. & Hamers, R. L., Jul 2024, In: The Lancet Regional Health - Southeast Asia. 26, 100414.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Citations (Scopus)

Association between dysbiotic perio-pathogens and inflammatory initiators and mediators in COVID-19 patients with diabetes

Bachtiar, E. W., Bachtiar, B. M., Kusumaningrum, A., Sunarto, H., Soeroso, Y., Sulijaya, B., Theodorea, C. F., Pratomo, I. P., Yudhistira, Efendi, D., Apriyanti, E. & Said, S. M., 30 Jan 2024, In: Heliyon. 10, 2, e24089.

Research output: Contribution to journal › Article › peer-review

Open Access

Characteristics and clinical outcomes of patients with pre-delta, delta and omicron SARS-CoV-2 infection in Indonesia (2020–2023): a multicentre prospective cohort study

Karuniawati, A., Pasaribu, A. P., Lazarus, G., Irawany, V., Nusantara, D. U., Sinto, R., Suwarti, Nasution, M. J., Ferawati, Lubis, M. R., Nurfitri, E., Mutiara, M., Arifin, H., Hely, H., Putri, P. A. D., Pradipta, A., Susanto, A. P., Kumaheri, M. A., Bonifacius & Da Costa, Y. & 14 others, Bogh, C., Safari, D., Lidia, K., Malewa, H. I., Nuraeni, N., Zanjabila, S., Rahardjani, M., Dewi, F. A., Wulandari, F., Subekti, D., Surendra, H., Baird, J. K., Shankar, A. H. & Hamers, R. L., 2024, (Accepted/In press) In: The Lancet Regional Health - Southeast Asia. 22, 100348.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Citations (Scopus)

Clinical characteristics of enteric fever and performance of TUBEX TF IgM test in Indonesian hospitals

Nurmawati, S., Alam, A., Djauhari, H., Merati, T. P., Sudarmono, P., Setiawaty, V., Arlinda, D., Sugiyono, R. I., Arief, M., Hadi, U., Aman, A. T., Lokida, D., Gasem, M. H., Tjitra, E., Liang, C. J., Neal, A., Kosasih, H., Karyana, M., Lau, C. Y. & Alisjahbana, B., Jul 2024, In: PLoS Neglected Tropical Diseases. 18, 7, e0011848.

Research output: Contribution to journal › Article › peer-review

Open Access

Clinical presentation, management, and outcome of suspected central nervous system infections in Indonesia: a prospective cohort study

Maharani, K., Dian, S., Ganiem, A. R., Imran, D., Estiasari, R., Ardiansyah, E., Andini, P. W., Kristina, F., Pangeran, D., Chaidir, L., Alisjahbana, B., Rukmana, A., Kusumaningrum, A., Adawiyah, R., Subekti, D., Yunihastuti, E., Yunus, R. E., Waslia, L., van Ingen, J. & van Laarhoven, A. & 2 others, Hamers, R. L. & van Crevel, R., 2024, (Accepted/In press) In: Infection. 52, 2, p. 583-595 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Comparative Analysis Molecular Simulation IL6R Alpha with TCZ and HIL6: Mechanism in Inflammatory Responses

Merizka, E., Wanandi, S. I., Bela, B., Widyaningtyas, S. T. & Fadilah, F., Jul 2024, In: Pharmacognosy Journal. 16, 4, p. 738-743 6 p.

Research output: Contribution to journal › Article › peer-review

Cut-off Value of HSPG for Early Marker of Plasma Leakage in Adult Dengue Patient

Chenderawasi, S., Dharma, R., Pohan, H. T., Dewi, B. E., Setiabudy, R., Suhendro, Aryati, Darmawan, H., Nainggolan, L. & Iskandar, A., 6 Jun 2024, In: Indonesian Journal of Clinical Pathology and Medical Laboratory. 30, 3, p. 259-264 6 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Development of Rapid Detection Kit for Necrotic Enteritis Disease in Poultry using Protein A Agglutination

Kurnia, R. S., Nugroho, C. M. H., Silaen, O. S. M., Putra, M. A., Rahmi, V. A., Amaliah, A., Hakim, R. W., Sanam, M. U. E., Soebandrio, A., Safika & Indrawati, A., 2024, In: World's Veterinary Journal. 14, 1, p. 8-14 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Diagnostic and antibiotic use practices among COVID-19 and non-COVID-19 patients in the Indonesian National Referral Hospital

Sinto, R., Lie, K. C., Setiati, S., Suwarto, S., Nelwan, E. J., Karyanti, M. R., Karuniawati, A., Djumaryo, D. H., Prayitno, A., Sumariyono, S., Sharland, M., Moore, C. E., Hamers, R. L., Day, N. P. J. & Limmathurotsakul, D., Mar 2024, In: PloS one. 19, 3 March, e0297405.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Dry eye symptoms are prevalent in moderate-severe COVID-19, while SARS-COV-2 presence is higher in mild COVID-19: Possible ocular transmission risk of COVID-19

La Distia Nora, R., Zahra, S. S., Riasanti, M., Fatimah, A., Ningtias, R. D., Ibrahim, F., Bela, B., Handayani, R. R. D., Yasmon, A., Susiyanti, M., Edwar, L., Aziza, Y. & Sitompul, R., 15 Apr 2024, In: Heliyon. 10, 7, e28649.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Evaluation of SARS-CoV-2 quantification from oropharyngeal swabs, nasopharyngeal swabs, and naso-oropharyngeal swabs: A cross-sectional study

Ibrahim, F., Natasha, A., Yasmon, A., Rizal, C. T., Fithriyah, Karuniawati, A., Saharman, Y. R. & Sudarmono, P., 15 Apr 2024, In: Heliyon. 10, 7, e28647.

Research output: Contribution to journal › Article › peer-review

Open Access

Expert Panel Recommendations on the Clinical Practice Guidelines for the Diagnosis and Management of Invasive Candidiasis in Indonesia

Rozaliyani, A., Nelwan, E. J., Wahid, M., Aditianingsih, D., Karyanti, M. R., Pratiekauri, S., Susilo, A., Isbaniyah, F., Agustin, H., Saharman, Y. R., Adawiyah, R., Setianingrum, F., Irawany, V., Sedono, R., Latupeirissa, D., Putri, N. D., Sofvina, W. & Tugiran, M., 1 Apr 2024, In: Acta medica Indonesiana. 56, 2, p. 260-272 13 p.

Research output: Contribution to journal › Article › peer-review

Exploration of Student Adaptation to Blended Learning in Clinical Stage Medical Education During the COVID-19 Pandemic

Nafara, A. B., Wahid, M. & Felaza, E., 2024, In: Education in Medicine Journal. 16, 2, p. 1-17 17 p.

Research output: Contribution to journal › Article › peer-review

Expression and scale-up production of recombinant human papillomavirus type 52 L1 protein in methylotrophic yeast Hansenula polymorpha

Chairunnisa, S., Mustopa, A. Z., Bela, B., Firdaus, M. E. R., Irawan, S., Arifah, R. K., Irawan, H., Nurfatwa, M., Umami, R. N., Ekawati, N., Hertati, A. & Hasan, N., Mar 2024, In: Journal of Genetic Engineering and Biotechnology. 22, 1, 100342.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

First Indonesian report of WGS-based MTBC L3 discovery

Rukminiati, Y., Mesak, F., Lolong, D. & Sudarmono, P., Dec 2024, In: BMC Research Notes. 17, 1, 176.

Research output: Contribution to journal › Article › peer-review

Open Access

First report of amphotericin B resistant Candida haemulonii isolated from the ICU of a referral hospital in Indonesia

Yasmon, A., 15 Apr 2024, In: Iranian Journal of Microbiology. 16, 2, p. 280 - 284

Research output: Contribution to journal › Article › peer-review

Open Access

Genetic and phenotypic of Pseudomonas aeruginosa sensitive to meropenem antibiotics after exposure to meropenem

Evendi, A., Karuniawati, A., Ibrahim, F. & Asmarinah, 2024, In: Iranian Journal of Microbiology. 16, 3, p. 299-305 7 p.

Research output: Contribution to journal › Article › peer-review

Hearing instability and abnormal auditory pathways in infants with congenital cytomegalovirus infection: An audiological and radiological single-centre prospective cohort analysis

Airlangga, T. J., Bashiruddin, J., Mangunatmadja, I., Pandelaki, J., Bardosono, S., Ibrahim, F., Zizlavsky, S. & Anggraini, R., 1 Jul 2024, In: The Medical journal of Malaysia. 79, 4, p. 414-420 7 p.

Research output: Contribution to journal › Article › peer-review

Implementation of a Randomized, Placebo-Controlled Trial of Live Attenuated Malaria Sporozoite Vaccines in an Indonesian Military Study Population

Indrihutami, K., Chand, K., Fahmia, R., Rahardjani, M., Wulandari, F., Subekti, D., Noviyanti, R., Soebandrio, A., Mallisa, N. T., Mardika, I. M., Budiman, W., Suriswan, I., Ertanto, Y., Chen, M. C., Murshedkar, T., Abebe, Y., Sim, B. K. L., Hoffman, S. L., Richie, T. L. & Chen, S. & 4 others, Elyazar, I. R. F., Ekawati, L. L., Baird, J. K. & Nelwan, E. J., 2024, In: American Journal of Tropical Medicine and Hygiene. 110, 5, p. 892-901 10 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Infeksi Bakteri Langka Chromobacterium Violeceum Pada Chronic Granulomatous Disease (CGD)

Tjampakasari, C. R., Kiranasari, A. & Ningsih, I., 1 Mar 2024, In: Kesehatan Kreatif: Jurnal Riset Kesehatan Inovatif. 6, 1, p. 1-14

Research output: Contribution to journal › Article › peer-review

KULTUR SLIDE SEBAGAI METODE MIKROSKOPIK TIDAK LANGSUNG UNTUK IDENTIFIKASI JAMUR KAPANG.

Arleni & Tjampakasari, C. R., 25 Jan 2024, In: Jurnal Sehat Indonesia. 6, 1, p. 201-210

Research output: Contribution to journal › Article › peer-review

Latent Tuberculosis: Interaction of Mycobacterium tuberculosis with Macrophages

Andriansjah, 1 Mar 2024, In: EKSAKTA: Berkala Ilmiah Bidang MIPA. 25, 1, p. 69-80

Research output: Contribution to journal › Article › peer-review

Open Access

Lysosomal enzymes and the oxygen burst capability of monocyte-derived macrophages in active drug-resistant tuberculosis patients in relation to cell attachment

Iswanti, F. C., Handayani, K. M., Kusumaningrum, A., Yamazaki, T., Handayani, D. & Sadikin, M., May 2024, In: Tuberculosis. 146, 102498.

Research output: Contribution to journal › Article › peer-review

Open Access

Mobile Genetic Elements Associated with Third-Generation Cephalosporin Resistancein Klebsiella pneumoniae

Kiranasari, A. & Tjampakasari, C. R., 1 Jun 2024, In: EKSAKTA: Berkala Ilmiah Bidang MIPA. 25, 2, p. 177-187

Research output: Contribution to journal › Article › peer-review

Open Access

Modification of Indonesian Kaolinite-Based Silica Coarse (SC) for RNA Extraction Method of SARS-CoV-2

Marintan, M. M., Sjatha, F., Nurani, D. A., Krisnandi, Y. K. & Sariman, S., Apr 2024, In: Science and Technology Indonesia. 9, 2, p. 325-335 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Molecular characterization and the virulence gene presence of uropathogenic Escherichia

Karuniawati, A., 13 Jan 2024, In: Bali Medical Journal. 13, 1, p. 662-667

Research output: Contribution to journal › Article › peer-review

Open Access

Morphological Characteristics and Differentiation of Acinetobacter baumannii Colony on Selective Medium CHROMagar Acinetobacter

Kiranasari, A., 30 Mar 2024, In: EKSAKTA: Berkala Ilmiah Bidang MIPA. 25, 1, p. 91-98

Research output: Contribution to journal › Article › peer-review

Open Access

Mortality of cytomegalovirus infection among people living with HIV: A retrospective study from a tertiary hospital in Indonesia

Yunihastuti, E., Kurniati, N., Yusuf, M., Yasmon, A., Sjatha, F., Edwar, L., Nusyirwan, S. A., Imran, D., Kurniawan, J., Lubis, A. M., Yulianti, M., Pitoyo, C. W., Nugroho, P., Rusdi, L., Susilo, A., Sinto, R., Muktiarti, D., Maharani, K., Adhari, A. I. & Nora, R. L. D. & 4 others, Achmad, Y. N., Purap, M. M., Karjadi, T. H. & Widhani, A., 2024, (Accepted/In press) In: International Journal of STD and AIDS.

Research output: Contribution to journal › Article › peer-review

Multidrug-Resistant Bacteria Colonization in Patients Admitted to Dr. Cipto Mangunkusumo Hospital Jakarta, Indonesia

Shahab, S. N., Karuniawati, A., Syarif, O. M., Saharman, Y. R., Sinto, R. & Sudarmono, P. P., 1 Apr 2024, In: Acta medica Indonesiana. 56, 2, p. 191-198 8 p.

Research output: Contribution to journal › Article › peer-review

Mycobacterium tuberculosis Lineage Distribution Using Whole-Genome Sequencing and Bedaquiline, Clofazimine, and Linezolid Phenotypic Profiles among Rifampicin-Resistant Isolates from West Java, Indonesia

Rukmana, A., Gozali, C. & Erlina, L., 2024, In: International Journal of Microbiology. 2024, 2037961.

Research output: Contribution to journal › Article › peer-review

Open Access

Nanostructured lipid carriers: A prospective dermal drug delivery system for natural active ingredients

Fitriani, E. W., Avanti, C., Rosana, Y. & Surini, S., 2024, In: Pharmacia. 71, p. 1-15 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Nasopharyngeal carriage of Streptococcus pneumoniae among children <5 years of age in Indonesia prior to pneumococcal conjugate vaccine introduction

Safari, D., Daningrat, W. O. D., Milucky, J. L., Khoeri, M. M., Paramaiswari, W. T., Tafroji, W., Salsabila, K., Winarti, Y., Soebandrio, A., Hadinegoro, S. R., Prayitno, A., Childs, L., Pimenta, F. C., Carvalho, M. D. G. & Pilishvili, T., Jan 2024, In: PloS one. 19, 1 January, e0297041.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Needs Analysis for Competence of Information and Communication Technology for Medical Graduates

Vardhani, A., Findyartini, A. & Wahid, M., 2024, In: Education in Medicine Journal. 16, 2, p. 119-136 18 p.

Research output: Contribution to journal › Article › peer-review

Ocular tuberculosis with Mycobacterium tuberculosis DNA presence in ocular fluid: will post-COVID era bring a difference?

Putera, I., Widodo, E., Riasanti, M., Waliyuddin, M. Z., Sitompul, R., Edwar, L., Susiyanti, M., Aziza, Y., Yasmon, A., van Hagen, P. M. & La Distia Nora, R., 2024, (Accepted/In press) In: Eye (Basingstoke).

Research output: Contribution to journal › Article › peer-review

Optimizing Gram-Negative Bacteria Isolation from Children Diarrheal Stool Samples in Jakarta: A Comparative Analysis of Six Culture Media

Saharman, Y. R., Prasetyo, D. S., Fadilah & Syarif, B. H., 2024, In: AL-HAYAT: Journal of Biology and Applied Biology. 7, 1

Research output: Contribution to journal › Article › peer-review

Open Access

Optimizing PEEK implant surfaces for improved stability and biocompatibility through sandblasting and the platinum coating approach

Faadhila, A., Taufiqurrakhman, M., Katili, P. A., Rahman, S. F., Lestari, D. C. & Whulanza, Y., 2024, In: Frontiers in Mechanical Engineering. 10, 1360743.

Research output: Contribution to journal › Article › peer-review

Open Access

Preparation of nickel foam modified by multiwalled hollow spheres of NiCo₂O₄ as a promising non-enzymatic glucose sensor

Eprilia, N., Sanjaya, A. R., Pramadewandaru, R. K., Pertiwi, T. A. H., Putri, Y. M. T. A., Rahmawati, I., Dewi, B. E., Krisnandi, Y. K., Chung, H. & Ivandini, T. A., 3 Apr 2024, In: RSC Advances. 14, 15, p. 10768-10775 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Production and characterization of immunoglobulin G anti-rLipL32 antibody as a biomarker for the diagnosis of leptospirosis

Susanti, S., Sudarmono, P. P., Dharmayanti, N. L. P. I. & Yusuf, P. A., 1 Apr 2024, In: Veterinary World. 17, 4, p. 871-879 9 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Prone-to-Infectivity of Omicron BA.2 Subvariant from Indonesia on ACE-2 Expressing Cell Lines

Hidayati, W., Hidayati, D., Khairindra, F. L., Umakappa, M., Sudarmono, P. P., Farida, S., Wirabrata, I. G. M. & Dewi, B. E., Jul 2024, In: Journal of Advanced Research in Micro and Nano Engineering. 21, 1, p. 54-65 12 p.

Research output: Contribution to journal › Article › peer-review

Sampling of Sars-Cov-2 Covid-19 an Air Using the Impingement Method with Real-Time PCR as Detection Examination

Tjampakasari, C. R., Yasmon, A., Saharman, Y. R. & Fithriyah, 2024, In: East Asian Journal of Multidisciplinary Research. 3, 3

Research output: Contribution to journal › Article › peer-review

Statins enhance extracellular release of hepatitis C virus particles through ERK5 activation

Aoki-Utsubo, C., Kameoka, M., Deng, L., Hanafi, M., Dewi, B. E., Sudarmono, P., Wakita, T. & Hotta, H., 2024, (Accepted/In press) In: Microbiology and Immunology.

Research output: Contribution to journal › Article › peer-review

Surveillance of Fungal Airborne Contamination in Hospital Wards in Indonesia 2020-2021: Impact of HEPA Filters and Occupancy

Aziz, M. H., Tjampakasari, C. R., Aditianingsih, D. & Wahid, M., 2024, In: Infection, Epidemiology and Microbiology. 10, 1, p. 43-50 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

The utility of salivary CRP and IL-6 as a non-invasive measurement evaluated in patients with COVID-19 with and without diabetes

Bachtiar, E., Bachtiar, B. M., Kusumaningrum, A., Sunarto, H., Soeroso, Y., Sulijaya, B., Apriyanti, E., Theodorea, C. F., Putra Pratomo, I., Yudhistira, Y., Efendi, D. & Lestari, W., 2024, In: F1000Research. 12, 419.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Two Novel Amino Acid Insertions in the Helicobacter pylorirdxA Gene Detected in Gastric Paraffin Biopsies

Yasmon, A., Wahid, M. H., Krisnuhoni, E. & Fadilah, 18 Mar 2024, In: Iranian Journal of Medical Microbiology. 18, 1, p. 1-8

Research output: Contribution to journal › Article › peer-review

Open Access

Whole genome sequencing data of Streptococcus pneumoniae isolated from Indonesian population

Khoeri, M. M., Maladan, Y., Salsabila, K., Alimsardjono, L., Vermasari, N., Puspitasari, I., Yunita, R., Tafroji, W., Sarassari, R., Sari, R. F., Balqis, S. A., Wahid, G. A., Purwanto, D. S., Harimurti, K., Soebandrio, A. & Safari, D., Apr 2024, In: Data in Brief. 53, 110251.

Research output: Contribution to journal › Article › peer-review

Open Access